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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACACACAAAATTTATCAGAGCTAAGTCTTAATGGTCCTGTTGGACAAGTATATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGgtaaatattttcttttcctttgacaatgttttgttttatttagagtcatgctttattttttgatgcagtagtcctgatttaaatgttgattatgcttagg...

Basic information

species Glycine max
transcript GLYMA16G32370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G51980.2 (Arabidopsis thaliana), 5'ss of exon 4
CTGGAACACACAAAATTTATCAGAGCTAAGTCTTAATGGTCCTGTTGGACAAGTATATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGgtaaatattttcttttcctttgacaatgttttgttttatttagagtcatgctttattttttgatgcagtagtcctgatttaaatgttgattatgcttagg
 ||||| |   |||      | || |  ||||| | ||| |||||||| ||||| ||| | |||||||||  || |||| ||||||||||||| |||||||||||| |     ||| ||||     || |  | | | |    |   ||  |    |||| | |  |  |||    | ||   | |  ||| ||   || 
GTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGTCTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGgtaaatttccaagttttcttt--tcttgctgagatctctgcgaa---atagtcggcttttggttatataagtgacaagttc--tttacattctgtgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590921|gb|AW706664.1|AW706664
EST:     AAGTATATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAG                         GACGGATCTATATTGGCATGGAAGTTTAATGTAGCTACCAACTGCTTTGAG
genomic: AAGTATATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGgtaaatattt ... tctcctgcagGACGGATCTATATTGGCATGGAAGTTTAATGTAGCTACCAACTGCTTTGAG