1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGAATGATGTAGCCTCCAGTAGCAGAAGAGGCACTGGACAATCTGGTGGTTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtactattatttgattgtttttctcatagatcatgtcatttattgctttttttatgattgttactctttaatgggtgcttgtgcttctcctttat...
species | Glycine max |
transcript | GLYMA16G31990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|19269569|gb|BM885825.1|BM885825
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|298197148|gb|HO041891.1|HO041891
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|192328311|gb|FK020022.1|FK020022
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG AT----A----G---G-AACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|13563106|gb|BG551326.1|BG551326
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|13480069|gb|BG509412.1|BG509412
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|207771520|gb|GD744255.1|GD744255
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACATCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACTEST: gi|15204601|gb|BI427369.1|BI427369
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
EST: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATG ATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
genomic: TTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtact ... atactgttagATTCTGAAACAGATAGGAACTTGAGTTTTAAAGAGCACAGAAAGGCCCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAATGATGTAGCCTCCAGTAGCAGAAGAGGCACTGGACAATCTGGTGGTTGGACGTCATCTGAGGATGAGCCAGAAGCAATGGAGCAAGATGATGATGgtattgtactattatttgattgtttttctcatagatcatgtcatttattgctttttttatgattgttactctttaatgggtgcttgtgcttctcctttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG