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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGTCGTGAATATGCTCGCTGGTTGGTTTCTGCTAGCAGTGCTCTTTCAAGgtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttag

Basic information

species Glycine max
transcript GLYMA16G30160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGTCGTGAATATGCTCGCTGGTTGGTTTCTGCTAGCAGTGCTCTTTCAAGgtagtaatttgtttctaccttctgcatatgtgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgcctttctggtaacttgttag--
|| |||||  | |||| ||  |||   |||||||||||||| |||||||  ||||| ||| |||||||||| |||| | |||| || |||||   ||       |  |||    |    ||||    | | ||||  | || |  | |   |  ||  |||||    | |||  | | | ||||   
GTTATTGAATCCGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGTTGGGTGGTTTCTGCAAGCAATACTCTATCGAGgtaactatcaaaaaatctctttcctactcttgaa----acattgtgaaatattt-cactgccttaca--acgtgaaaatatct--tcattggttatag

upper sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 5
GTCATTGAGCCTGATGTTCAACCTAGTGATTTATGTACACGTCGTGAATATGCTCGCTGGTTGGTTTCTGCTAGCAGTGCTCTTTCAAGgta-gtaatttgtttctaccttctgcatatg-----tgaataacaaaatgtgttacatgtgtaatatttggcattacgtgtgc-ctttctggtaacttgttag
||||| || ||||||||||||||||| ||| |||||||||||||||| | |||||| |||||||||||||| || |||| ||||||||||||    || |   ||| | || |   |||      |   | | |      |  |  | ||||  || |   |  |     |  |  |   |||    |    
GTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatcttgctcttctttgtttctataacttcttcttgataggcgaagaaaggtatgtataatataataacaaaaaagtacactgaagtacacagg---