Sequence
atgc intronic sequence ATGC exonic sequenceTTACCAGAAGTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAgtatgctaatatttgttgtattttaaaataattaatatgctattatgagaaagtgtgggtaatacttcttttttttaccataatgctatgtttgtagttg...
Basic information
species | Glycine max |
transcript | GLYMA16G30070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G30070.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTACCAGAAGTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAgtatgc--taatatt-tgttgtattttaaaataattaatatgctattatgagaaagtgtgg-gtaatacttcttttttttaccataatgctatgtttgtagttg
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GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctgtatttggagttatttcaattgagatatgtttatt----
upper sequence: GLYMA16G30070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
--TTACCAGAAGTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAgtatgctaatatttgttgtattttaaaataattaatatgctattatga-gaaagtgtgggtaatacttcttt-tttttaccataatgctatgtttgtagttg
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GTATAGTAGCATTGG--TGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtct-tgtccatctaacacatgcatgttttct-tgaccttatggtgcatgtatagttacaatgcatttgtatgcattgcaactttttttctcgagcgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208285868|gb|GE082552.1|GE082552EST: CAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAA GAAGATGGGATAGATATTACTGCAAATTCTCTTCATCCAGGAGACTATTAT
genomic: CAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAgtatgctaat ... tcatgttcagGAAGATGGGATAGATATTACTGCAAATTCTCTTCATCCAGGAG-CTATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACCAGAAGTGGCGTGCATATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAACGAACTTGCAAGACTTCTTAAAgtatgctaatatttgttgtattttaaaataattaatatgctattatgagaaagtgtgggtaatacttcttttttttaccataatgctatgtttgtagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg