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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCTAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGgtttgacaagaattttcatttgccttgatgattaatcttaatgcccagtattttcttttattctcattatcccctatctctgcag

Basic information

species Glycine max
transcript GLYMA16G29780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 8
GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCTAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGgtttgacaagaattt---tcatttgccttgatgatta-atcttaatgcccagtattt--tcttttattctcattatcccctatctctgcag----------------
|||||||| |||| ||||| ||||||||||||||  |||||||||| || || || |||||| | || ||||| |||  |||||| ||  | |||   ||||||||   |  |||    || ||  |    ||| || | ||| ||  |||   ||    |  || |||||||  |    |    |||                   
GGCCTTACTTGATAGAGATAATGTTCTCTGATCAGGTCCAGATATCGAACCTTACATTGATCGACTCCCCATCATGGAATGTCCACCCCGTCTACTGCAGgtttgatgggcttttagaccaattctcactttgaatataccttgatttccaaacttcagcccctttttctcatatttgtatggtactgattgaaattgaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396511|gb|EV266388.1|EV266388
EST:     CTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAG                         TGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAA
genomic: CTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGgtttgacaag ... atctctgcagTGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAA