Sequence
atgc intronic sequence ATGC exonic sequenceGAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattcagattatgaatcccaatcttgacaatgctctagtgtctatttctttgtgtgccttgagttgcgtgggagggtagttgctcaggattgatgttatggtggtttcctatggacataatattcacattaatttgttgcag
Basic information
species | Glycine max |
transcript | GLYMA16G28980.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattcagattatgaatcccaatcttgacaatgctctagtgtctatttctttgtgtgccttgagttgcgtgggagggtagttgctcagg-attgatgttatggtggtttcctatggacataatattcacattaatttgttgcag
| || ||||| |||||||||||||||||||| ||||| || ||||||||| |||| |||| || ||||||| |||||||| ||||||||||||||||| ||||| | | | || | || || | | || | | |||| | | | || || || | || ||| | | || || || | | | | | | |
AAAGACTCTGTCAAATGTGAAGTTGTTGATGGTGGAGAACTTAAGTCAAGGAGACACCTGAATGTCCGAGGAAAGAGTGCAACTTTACCTTCAATCACTGgttcgaatttt--ctgtttaccctctttttcactttttcttgttgctttggttgaagtgttgcat-atttaagtctgaaagatcttactctgatgcttattttttgtaattattttcttgccgcag----------------------
upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 4
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattcagattatgaatcccaatcttgacaatgctctagtgtctatttctttgtgtgccttgagttgcgtgggagggtagttgctcaggattgatgttatggtggtttcctatggacataatattcacattaatttgttgcag
| ||||| ||||||||||||||||||||||| ||||| |||||||| || | ||| | || ||| ||||||||||||||||||| || ||||| |||||| || || |||| |||| ||||| | | | | | |||||| ||| | | | | ||||| | ||| ||
GGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGgttgga---catggaatgagtccc--------caatgttt--atagcaaatgctttgt----tttgcaattcaaaataaca-atttgctttgatttgctgcag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193466016|gb|FK430205.1|FK430205EST: GCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTG AGAAGGATTGGGATGATATCAAGTTTGGAGTGGATAACAAAGTTGACTTCT
genomic: GCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattc ... tttgttgcagAGAAGGATTGGGATGATATCAAGTTTGGAGTGGATAACAAAGTTGACTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGCGACATTTGAACGTTAGAGGAAAAAGTGCAACACTACCTTCAATCACTGgtcagaattcagattatgaatcccaatcttgacaatgctctagtgtctatttctttgtgtgccttgagttgcgtgggagggtagttgctcaggattgatgttatggtggtttcctatggacataatattcacattaatttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA