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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGgtatattctctttagattctagtttctcacagcatgcattttgtgtgatcaatcatggttttactgatatctgttttgaatgatgtggagaactttatgt...

Basic information

species Glycine max
transcript GLYMA16G28200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28200.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g36190.1 (Oryza sativa), 5'ss of exon 4
CTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGgtatattctctttagattctagtttctcacagcatgcattttgtgtgatcaatcatggttttactgatatctgttttgaatgatgtggagaactttatgt
| || ||| ||  | | | |||||| |||||||| ||| |||| ||||||||||| || ||||| |||||||| |  ||||| || ||||||||||| |||||    || ||| |  |  || |  | ||| | | | ||| |    ||  ||  || |  |||  | | |    |||  |  |||     | |||  | 
CCGCTAAAAGGCACCGCAAAACAACCTGCACAGAATATGTTATCTCAATGGATGCAGACAACATTTCAAGATCAAGCAGCACCTATATTGGAAAACTAAGgtaa---ctgttttgtgtgcagatggt-acacctttcctttcgctccatttatt-tgatgatac--aaaccaaccttg--ttgtgtctttcatttttag-

upper sequence: GLYMA16G28200.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 5'ss of exon 3
CTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGgtatattctctttagattctagtttctcacagcatgcattttgtgtgatcaatcatggttttactgatatctgttttgaatgatgtggagaactttatgt-----
|||||||||| | ||| ||||| || |||||||| ||| | || || |||||||| ||||||||||||||||| |  |||||||| ||||| || || ||||| ||         ||| |  || |        | ||||  ||   |     |||    ||  | ||  |   | ||||  |||   | |  ||| |||     
CTGCAAAACGAAACAGGAGAACTACTTGCACAGAATATGTAATCTCCATGGATGCCGATAACATATCAAGATCAAGCAGCACTTATATTGGGAAGCTGAGgtagatgaatacaccatttttcttaccattcttttacattcagt--aaatgcccatcaactttatcatggc--atgtgaactatgcc-atatttttgtgtgtccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637880|gb|FK585738.1|FK585738
EST:     GATGCGGATAACGTATCAAGATCTAATAGCACTTACATTGGAAAACTCAG                         GTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTA
genomic: GATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGgtatattctc ... ctcatttcagGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTA
EST: gi|7588744|gb|AW704533.1|AW704533
EST:     GATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAG                         GTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTA
genomic: GATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGgtatattctc ... ctcatttcagGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTA