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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgtagttttggttcctaacctgcctttaccacttttgtttgtcattcctttaaaagtttatggtgaacattttgaaaacacaatttcaacagctagagtaa...

Basic information

species Glycine max
transcript GLYMA16G27960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G76730.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgta--gttttggttcctaacctgcctttac---cacttttgtttgtcattcctttaaaagtttatggtgaacattttgaaaacacaatttcaacagctagagtaa
|| ||||| ||||| |||||||| ||| || | |||||||||||||| |||||||| ||||  ||||||||| ||||||    |    ||   ||    ||||||    |||||||  || | || ||||     | | |||  |    |  |  |    ||                   
GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatacaatttagaagaaacctttatatacactttttctt-ttatacctt----ggctcatgaagcttttacttcatttgcag------------------

upper sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 4
GGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgtagttttggttcctaacctgcctttaccacttttgtttgtcattcctttaaaagtttatggtg----aacattttgaaaacacaatttcaacagctagagtaa
|| |||||||||||||||||||| ||| || |||||||||||||||| |||||  | || |   |||| || || ||||  |  | |||   | ||    || | |   || | |||   |  |  |   | |   |||     |||  ||||  |   || | |||  |  |       
GGGTTTGCAGAACTTGAATATGGGATGTTGCGGTACATGGGAGCCATAGATGACACTACTCCTATTGTCACCTCAGgtaagtaggtttctacaactattgttgctatgattatctgtttcttttggaggggatccaggtactgtaaccctttggcatt-cattctcagtatatcact---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525267|gb|BU084078.1|BU084078
EST:     GCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTG                         TGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCC
genomic: GCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgtagttttgg ... acccttgcagTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCC
EST: gi|51338397|gb|CO982263.1|CO982263
EST:     GCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTG                         TGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCC
genomic: GCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgtagttttgg ... acccttgcagTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCC