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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggcatagctcaaacgatatagtttaacactgatacttttagttagatgggcactcaagtcttgaccatcaattcactttctatgcag

Basic information

species Glycine max
transcript GLYMA16G27570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 5
CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggcatagctcaaacgatatagtttaacactgatacttttagttagatgggcactcaagtcttgaccatcaattcactttctatgcag
    || | |||||||||||||||| ||| | |||||||||||||||   | |    | |    | | |||     |||| | | |   |||  |  ||   |    |  |   |    ||   ||   |  ||
---TAGGAGCTGATATGGACTTTGGCGACTTCGATTTTTCTgtaagtactaaattggacatatgaaaattttgt-ttgatgcgtgtg--tagcagctcatggacacatataaatttgtgtcttctttattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207796445|gb|GD769767.1|GD769767
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
EST: gi|209703751|gb|BW665024.1|BW665024
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
EST: gi|213614007|gb|DB960972.1|DB960972
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGCGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
EST: gi|298188987|gb|HO035712.1|HO035712
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATG
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATG
EST: gi|192323243|gb|FK017409.1|FK017409
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
EST: gi|193330348|gb|FK294912.1|FK294912
EST:     CATTGATTTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAA
genomic: CATTGA-TTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAA
EST: gi|192297482|gb|FG989517.1|FG989517
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAG
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAG
EST: gi|192295643|gb|FG990497.1|FG990497
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
EST: gi|192327386|gb|FK018148.1|FK018148
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtggca ... ttctatgcagAAGTTGGGCATGGGAGGGGGTGAAGGATTGGATTCTGATGCTGCAGGCAAT