1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAGgtaaggatttgttcttaaaatgaattgctgtcaacatgaattagttactggatatatagcatgattgctgtaatttttccaatttgtttttatttgatgt...
species | Glycine max |
transcript | GLYMA16G27210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGCATCTTTTGGAGGTGATCTTGAG GATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGGEST: gi|27424557|gb|CA936077.1|CA936077
genomic: GGAGCATCTTTTGGAGGTGATCTTGAGgtaaggattt ... attgtgacagGATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGG
EST: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAG GATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGGEST: gi|193346232|gb|FK309724.1|FK309724
genomic: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAGgtaaggattt ... attgtgacagGATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGG
EST: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAG GATGCCAGGAATTATGGGTGGGAGTTGAEST: gi|151394106|gb|EV263977.1|EV263977
genomic: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAGgtaaggattt ... attgtgacagGATGCCAGGAATTATGGGTGGGAGTTGA
EST: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAG GATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGG
genomic: TTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAGgtaaggattt ... attgtgacagGATGCCAGGAATTATGGGTGGGAGTTGAGTGAGAAAGTTGACTTCAATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATCTTTTGGAGGTGATCTTGAGgtaaggatttgttcttaaaatgaattgctgtcaacatgaattagttactggatatatagcatgattgctgtaatttttccaatttgtttttatttgatgt
- - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG