Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaattgaactctgggtgttctgtgatgtgatgtttacttggtgtcactttggtgattctattctctttgttcttttagataatcatcacatgtga...

Basic information

species Glycine max
transcript GLYMA16G27020.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23058846|gb|BU578339.1|BU578339
EST:     GAGTTGCTGAGATTTCTATTAAAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|31470014|gb|CD412042.1|CD412042
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|31470725|gb|CD412753.1|CD412753
EST:     GAGTTGCTGAGATTTCTATNAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|7146773|gb|AW508695.1|AW508695
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|209702151|gb|BW677951.1|BW677951
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|192334422|gb|FK024115.1|FK024115
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|6747004|gb|AW317460.1|AW317460
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|31472202|gb|CD414230.1|CD414230
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|209702150|gb|BW677950.1|BW677950
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|298171130|gb|HO016162.1|HO016162
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|10255867|gb|BE823633.1|BE823633
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|298197096|gb|HO041839.1|HO041839
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT
EST: gi|15200962|gb|BI424621.1|BI424621
EST:     GAGTTGCTGAGATTTCTATTAGAGATAGACAG                         ATTCCTCTAACTGGAGTTCACTCCATAATCGGAAGGGCCGTTGTTGTGCAT
genomic: GAGTTGCTGAGATTTCTATTAGAGATAGACAGgtaaagaatt ... caatatgtagATTCCTCTAACTGGAGTTCACTCCATAATTGGAAGGGCCGTTGTTGTGCAT