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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatcaattgctatgagtaactttaatttttacttttgttgttctcgaatttgggttgaaacctaactcaacccaaaagttagctcatgaggtgt...

Basic information

species Glycine max
transcript GLYMA16G26850.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26850.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc-----------------aattgctatg-agtaactttaa------tttttacttttgttgttctcgaatttgggttgaaacctaactcaacccaaaag--ttagctcatgaggtgt----------------------------------------------------
|| || | |||||| || || ||||||||||||||||||||||||||||||||  |   |                  ||||  |    || ||| | ||       |  |  |  || |||| | ||| |  ||||||      | | || | |   |  |  |  | |  | |                                                      
GACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGTGgtgagttgttttcgcgtattcgcgcctaattattgaacagaaacgtcaaaaaagactaatgttaatggtgtttttgaaatatggttgatgtgcgagtgaaactaggtgattcggtccttatgatcatcttctgtcagtgctctagctgattcattacttattttcttgattttgatag

upper sequence: GLYMA16G26850.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatcaattgctatgagtaactttaatttt-tacttttgttgttctcgaatttgggttgaaacctaactcaacccaaaagttagctcatgaggtgt--
|| || |  |||||||||||||||||||||||||| |||||||||| |||||| || ||  ||    | ||  ||| |    |||| ||||||  |||  ||  ||   |   ||     |  || |   |     |   ||  |    | |  
GACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTGgtttgtaactaagccttttgcttaattcatgttttatactttctttgc-ctaaaaacagaactgg--tttttcttatttcttttttcttcttttacatttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208297987|gb|GE095792.1|GE095792
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
EST: gi|209718497|gb|BW677667.1|BW677667
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
EST: gi|208218115|gb|GE016553.1|GE016553
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAGATTGATAA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAA
EST: gi|207846424|gb|GD819455.1|GD819455
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGA-TTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
EST: gi|213615319|gb|DB963513.1|DB963513
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
EST: gi|213616529|gb|DB967179.1|DB967179
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGNGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
EST: gi|208097464|gb|GD896363.1|GD896363
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAGATTGATAACTTTGAAGCTGAGCTTGAAGGA