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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatatgcattcttctttctcttctttcaattgttactttaaaagattgcttaataatagtgatgatggaatgtaaaattttcgaactgcaaaagt...

Basic information

species Glycine max
transcript GLYMA16G26700.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26700.4 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g48820.2 (Oryza sativa), 5'ss of exon 5
TTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatga-atatgcattcttctttct--cttctttcaattgttact-ttaaaagattgctta-ataatagtgatgatggaatg-taaaattttcgaactgcaaaagt
||||||| ||   |||||| ||||||||||| || ||||| ||||| || |  |||||||||||||| || || |||||||||||||| ||| || | ||||| || ||    |||  |  |       | ||| | |||  | | |||  |||||  ||| |  || ||    |     |  ||| ||  |     | |      
TTGAAGTTTTCCAGCAGCAACTTGAACTTGCTAAGGAGTTGAACAAGCCTGTTTCTGTTCATTGTGTGCGCGCCTTTGGTGATCTTCTGGAGATACTAAAgtaagacatggagatttgttctcaaagtatgtttaagttgaaattcttagtagattatttatagtatggtatccaccagttcctaacatagttcggatac------

upper sequence: GLYMA16G26700.4 (Glycine max), 5'ss of exon 4
lower sequence: AT5G17570.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatat--gcattcttctttctcttctttcaattgttactttaaaagattgcttaataatagtgatgatggaatgtaaaattttcgaactgcaaaagt
||   || ||  | || ||||||||||||||||| || || || ||||| || || ||||||||||||||||| ||||| ||||| || ||| || | ||||||||   |  || || |  | ||   | || | |   |||  | ||    ||   | || || ||| |  || ||| |  |                   
TTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAgtatgatcttcggctttatattctcatgtgttgctacaattatgtcaatgtgtt--cttatgat-gtgttattgtaatatgcag------------------

upper sequence: GLYMA16G26700.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0024g00050.t01 (Vitis vinifera), 5'ss of exon 6
TTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatatgcattcttctttctcttctttcaattgttactttaaaagattgcttaataatagtgatgatggaatgtaaaattttcgaactgcaaaagt
||||||| ||   ||| |||||||||||||| |||||||| || | |||||  ||||| ||||| |||||||||||||||||||||||| || ||||| ||||||  | |  ||  |  ||    |||  | ||| |||| | ||  |   ||   | |  |||  |    |     | | ||||    || | ||  | 
TTGAAGTTTTCCAGCAACAGCTTGAACTTGCCAAAGAGTTGAAAAGACCAGTTTCTGTCCATTGCGTTCGTGCTTTTGGTGATCTTCTTCAGATAATGCAgtatgggtctaaatgttatttgtatttcacttaatagttattgtactaacatgaaaattcttagaaagatagttgaattagatttcatgacagaaattga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335705|gb|GR847233.1|GR847233
EST:     GCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAA                         GTTTTTGGGGCCTTTTCCTGCCGGTGTCATTCTTCATTCTTACCTAGGTTC
genomic: GCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatat ... atattttcagGTTTTTGGGGCCTTTTCCTGCCGGTGTCATTCTTCATTCTTACCTAGGTTC
EST: gi|254341606|gb|GR852743.1|GR852743
EST:     GCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAA                         GTTTT-GGGGCCTTTTCCTGCCGGTGTC
genomic: GCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGAAgtatgaatat ... atattttcagGTTTTTGGGGCCTTTTCCTGCCGGTGTC