Sequence
atgc intronic sequence ATGC exonic sequenceTATCTTGGTTTTGCGGCAGCAGATGAATACTGCACACCTAGAGTAGTTGATACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGGgtaggtattattagtttgtattccagtcgttaaaatgtggttttttttgtttacatttgcatgtgtcttatcatgtttccttgaatgtggcttttccaatag
Basic information
species | Glycine max |
transcript | GLYMA16G26210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G357734_T02 (Zea mays), 5'ss of exon 8
TATCTTGGTTTTGCGGCAGCAGATGAATACTGCACACCTAGAGTAGTTGATACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGGgtaggtattattagtttgtattccagtcgttaaaatgtggttttttttgtttacatttgcatgtgtcttatcatgtttccttgaatgtggcttttccaatag
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TACCTTGGCTTTGCTGCAGCAGATGAATACTGCACACCACGTGTTATTGAGTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGTGgtaggatacatta--------tcaacatgcttatatgt--ttacaactttttaagaacaaaaactactaaac-tgatccctttcatctcgtatcag------
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067257_T01 (Zea mays), 5'ss of exon 6
TATCTTGGTTTTGCGGCAGCAGATGAATACTGCACACCTAGAGTAGTTGATACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGGgtaggtattattagtttgtattccagtcgttaaaatgtggttttttttgtttacatttgcatgtgtcttatcatgtttccttgaatgtggcttttccaatag
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TACCTTGGCTTTGCTGCAGCAGATGAATACTGCACACCACGTGTTATTGAGTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggatacatta--------tcaacatgcttatatgt--ttacaactttttaagaacaaaaactactaaac-tgatccctttcatctcgtatcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730538|gb|BM525934.1|BM525934EST: TACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGG GGACGACTGCACTTCACCTTGAATTGGAGGAGTGTGTTGCAAAATTTGTTG
genomic: TACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGGgtaggtatta ... tttccaatagGGACAACTGCACTTCACCTTGAACTGGAGGAGTGTGTTGCAAAATTTGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCTTGGTTTTGCGGCAGCAGATGAATACTGCACACCTAGAGTAGTTGATACGTTGAAGAAGTATTCTCCTAGCACTTGCAGTACCCGTGTGGATGGGGgtaggtattattagtttgtattccagtcgttaaaatgtggttttttttgtttacatttgcatgtgtcttatcatgtttccttgaatgtggcttttccaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT