1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGgtgagcttgtaactttcttgaaaaaatgatatcttttatatctcctattatgctaatcaaatatgagaaccttccttaaaaatcttcaaatgagtttgatttttcgtgtgatcattgtcag
species | Glycine max |
transcript | GLYMA16G26070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATG GTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAGEST: gi|14258992|gb|BG881900.1|BG881900
genomic: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGgtgagcttgt ... tcattgtcagGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAG
EST: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATG GTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAGEST: gi|192308091|gb|FK000419.1|FK000419
genomic: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGgtgagcttgt ... tcattgtcagGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAG
EST: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATG GTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAG
genomic: GGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGgtgagcttgt ... tcattgtcagGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGgtgagcttgtaactttcttgaaaaaatgatatcttttatatctcctattatgctaatcaaatatgagaaccttccttaaaaatcttcaaatgagtttgatttttcgtgtgatcattgtcag
- - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGGAA