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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgtttgaactagaatgtactttcaataaggcttctctgtacatgactggttaacttaaatctgtctaatctgtttccttttgttag

Basic information

species Glycine max
transcript GLYMA16G25460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25460.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G36640.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgt--ttgaactagaatgtactttcaataaggcttctctgtacatgactggttaacttaaatct-gtctaatctgtttccttttgttag
  | || |||||||||| |||||||| || ||||  || |||||||  |||||||||||||| || || |  |||||||| ||||| ||||  ||||||||   | | |        || || |  ||   || |||  |  |   |    || | | ||||    ||||     |      |    
AATCAAGTAGCACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGTAGTGCTTATAATGAGACCAGCCATGCAGgtaactaagcccattgtcacctttatgaatatttttcttgagttttttttaaaaatgatatctcacttaataaaaatgaaacag----

upper sequence: GLYMA16G25460.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 5
GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgtttgaactagaa-tgtactttcaataaggcttctctgtacatgactggttaacttaaatctgt---ctaatctgtttccttttgttag------------
  |||  |||| ||||| |||||||| || ||||| ||||||||| | |||||||||||||  |||||| | || ||||| |||||||||||||||||||||||  || ||| | || ||||  |    |||   |||  ||  || | | |||||  | |||    ||| ||||| | || | |               
CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgcttgaagtttagtttctgtc---cttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812708|gb|BI784983.1|BI784983
EST:     TTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG                         AATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAA
genomic: TTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgtttgaacta ... cttttgttagAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAA
EST: gi|298190241|gb|HO032362.1|HO032362
EST:     TTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG                         AATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAA
genomic: TTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgtttgaacta ... cttttgttagAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAA