Sequence
atgc intronic sequence ATGC exonic sequenceGACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCATGTTCATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGgtagattatggtattacctaactatttactgcattgtttaaatatcaaaatcccaaagatctgtccttttcagggatgagtctactgaatgatttattca...
Basic information
species | Glycine max |
transcript | GLYMA16G25400.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G25400.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G50860.1 (Arabidopsis thaliana), 5'ss of exon 4
GACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCATGTTCATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGgtagattatggtattacctaactattta--ctgcattgt----ttaaatatcaaaatcccaaagatctgtcc-ttttcagggatgagtctactgaatgatttattca
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GACTCGCGGCTTGTATACAAGCATTATGCTACACTCTATTTTGTTCTTGTATTTGATGGTTCAGAAAATGAGCTTGCTATGCTTGATCTCATTCAAGgtccgttttta-atcactatggttcttagattgcaatataatctgaaatggcatggtgtaaaacctttttccattttcaatttttgtgctttggaatgaga------
upper sequence: GLYMA16G25400.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01770.t01 (Vitis vinifera), 5'ss of exon 4
GACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCATGTTCATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGgtagattatggtattacctaactatttactgcattgtttaaatatcaaaatcccaaagatctgtccttttcagggatga-gtctactgaatgatttattca-----
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GATACTCGTCTTGTGTACAAGCACTATGCAACTCTCTATTTTGTCTTTGTATTTGATAGTTCTGAAAATGAGTTAGCCATGCTTGATTTGATACAAGgtatgtgctaaaactttttg-ttgtctactgga--aaccatgcacca---tttcaagtctttatatatggaaagaaagttgtcaaatgtctctcctgtggaaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213600159|gb|DB979780.1|DB979780EST: CATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAG TGTTTGTTGAAACAAAAGACAAATGCTTCAGAAATGTATGTGAGCTTGATA
genomic: CATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGgtagattatg ... ctgccttcagTGTTTGTTGAAACATTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GACTCTCGCCTTGTCTACAAGCACTTTGCAACTTTATATTTCATGTTCATATTTGATAGTTCTGAAAACGAGCTTGCTATGCTTGACTTGATACAAGgtagattatggtattacctaactatttactgcattgtttaaatatcaaaatcccaaagatctgtccttttcagggatgagtctactgaatgatttattca
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