1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAAAGCACTTATAGATTATGATGCTATGGTGTGGAGAGATCAAGTTGTTGACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaactatactacctgaatttacatcagggaattaggctgaaatgccagattcttcttcattccacaagttttagtgtttgctttccctgcatggtt...
species | Glycine max |
transcript | GLYMA16G25200.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGACTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|209725699|gb|BW663190.1|BW663190
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGEST: gi|298173858|gb|HO017194.1|HO017194
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTG
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCCTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|51337924|gb|CO981790.1|CO981790
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GGAAATAGTAAAAGAACCAACCGTTTTAG-TGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|192301616|gb|FG998468.1|FG998468
genomic: GGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|151399533|gb|EV269404.1|EV269404
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|209728318|gb|BW658530.1|BW658530
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: AAGGAAATAGTAAAAGAACCAACCG-TTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|151405996|gb|EV275811.1|EV275811
genomic: AAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|120529684|gb|EH257818.1|EH257818
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|20814627|gb|BQ299105.1|BQ299105
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGGTGCAGCAACTGGGTTGCCTGATCCTGTEST: gi|151405769|gb|EV275583.1|EV275583
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGTEST: gi|209716247|gb|BW657550.1|BW657550
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
EST: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAG CCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
genomic: GACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaacta ... aaattttcagCCTTGGAGGATTTACTGCTTTGGTTGCAGCAACTGGGTTGCCTGATCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAGCACTTATAGATTATGATGCTATGGTGTGGAGAGATCAAGTTGTTGACTTTGTGAAGGAAATAGTAAAAGAACCAACCGTTTTAGTTGGAAACAGgtaagaactatactacctgaatttacatcagggaattaggctgaaatgccagattcttcttcattccacaagttttagtgtttgctttccctgcatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc