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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGAATGGCCACGTAATTTTAACCCAAAGCAACTTGCTATATGCAAGTTACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtattgagttcatttcattgatattgtattgtaataagttcactttatggttattcatgtgttttttttttttaacgtgttgtagtaataatcacttcttgttcattgatttacttctttttttatttcttttttacgttgcag

Basic information

species Glycine max
transcript GLYMA16G25110.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024944|gb|CX711685.1|CX711685
EST:     TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG                         AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
EST: gi|6070559|gb|AW099946.1|AW099946
EST:     TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG                         AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
EST: gi|13481256|gb|BG510599.1|BG510599
EST:     TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAG                         AGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA
genomic: TACCCGAGAGTAGCTTTACGTCACTCGGGTTGGCCCCATTATTTGAAAAGgcaagtgtat ... tacgttgcagAGGCTCGTGAATTTGACAAGGTTAACTTTGGACGAGTGTGATAGTTTAACA