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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTGgtaaattaatttctacctaattttttaatgcttgatattatgatattgtgcattaattggttacttgctttcttctagcatgttaatttataatactact...

Basic information

species Glycine max
transcript GLYMA16G23340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 5
TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTGgtaaattaatttctacctaattttttaatgcttgatattatgatattgtgcattaattggttacttgctttcttctagcatgttaatttataatactact----
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TGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTGgtta---gatttcctttcagctttatggttcctcttcttactgtagactccat-agctgctcttttcttatgttcatgaagatggtttcagatccatgtccaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330643|gb|FK021962.1|FK021962
EST:     GAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTG                         ACCTTCGAGATGATAAGCAGTTCTTCATAGACCATCCTGGTGCTGTACCCA
genomic: GAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTGgtaaattaat ... aatgagacagACCTTCGAGATGATAAGCAGTTCTTCATAGACCATCCTGGTGCTGTACCCA
EST: gi|192330642|gb|FK021961.1|FK021961
EST:     GAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTG                         ACCTTCGAGATGATAAGCAGTTCTTCATAGACCATCCTGGTGCTGTACCCA
genomic: GAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTGgtaaattaat ... aatgagacagACCTTCGAGATGATAAGCAGTTCTTCATAGACCATCCTGGTGCTGTACCCA