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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAACATGACTCTTCTGAGCAGACGTGGATGATGTTTCCAGGAACTGATCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcattgttgtccatcctatcatgtaaagattaaaaagaaaatactaatttgaaaaaaaagcaagaaaatgtatttaaatgtttacccatgtttg...

Basic information

species Glycine max
transcript GLYMA16G19450.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574370|gb|CX547345.1|CX547345
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: gi|192297436|gb|FG989500.1|FG989500
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: gi|6482288|gb|AW201559.1|AW201559
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGGCTTTGATTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: gi|57574212|gb|CX547187.1|CX547187
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: gi|5770512|gb|AI973686.1|AI973686
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG
EST: gi|22931000|gb|BU548139.1|BU548139
EST:     TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAG                         ATCAAACGCAGCTTGACTTCGAGTCAAAGAGACTACAGAGCATTGTGAAGG
genomic: TCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcat ... ttatgtacagATCAAACGCAGCTTGACTTTGAGTCAAAGAGACTACAGAGCATTGTGAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAAACATGACTCTTCTGAGCAGACGTGGATGATGTTTCCAGGAACTGATCTGTTTGCCAGAATTCCATTTCATGCGGCTCATACTATATTGGAAACAGgttttttcattgttgtccatcctatcatgtaaagattaaaaagaaaatactaatttgaaaaaaaagcaagaaaatgtatttaaatgtttacccatgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa