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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag

Basic information

species Glycine max
transcript GLYMA16G19310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g28280.1 (Oryza sativa), 5'ss of exon 7
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag
|||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||   |  | ||   || |  ||   |  |    | | |||    | |||     |||||| |     ||| || || | | |                  
AGAGAGCTGTAGACAAGAATTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAGATAAGCCAGAAGTTTCCTATCATGCCCTTCACTGCTAGgttgctacaataac-gcttacttcagacgcacctttttgtt----tacta-----tattgtaacatgcatt-ttgaattgtcacag---------------

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133884_T01 (Zea mays), 5'ss of exon 3
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag
| | || ||| ||||||| |||| |||||||||||||||| || ||||| |||||||||||||| ||||| ||||| || |||||||| ||| |||||||||  | ||||| |          |  |   || || | |   |||| ||| || || |||||     |||| | | |      | ||   |  ||||    
AAATGGTTGTAGACAAGAATTATAACTTGAAGATGAAAGCATCAAGGTTTATTTTCAGTGAAATCAGCCAGAAGTTCCCAATCATGCCCTTCACTGCTAGgtc-tgtgattgcaca-------acgaatttgagttttga-agtgttctactt-ttgttgtc-----tattgtaacatgagcttatggactgcaatag---

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G388234_T01 (Zea mays), 5'ss of exon 3
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag
| |||||||| |||||||  ||| || ||||||||||||| || | ||| |||||||||||||| ||||| ||||| || | |||||| ||| |||||||||  | ||||| |          |  |   || || | |   |||| ||| || || |||||     |||| | | |      | ||   |  ||||    
AAAGGGCTGTAGACAAGAACTATAACCTGAAGATGAAAGCATCAACGTTTATTTTCAGTGAAATCAGCCAGAAGTTCCCAACCATGCCCTTCACTGCTAGgtc-tgtgattgcaca-------acgaatttgagttttga-agtgttctactt-ttgttgtc-----tattgtaacatgagcttatggactgcaatag---

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ35350 (Selaginella moellendorffii), 5'ss of exon 6
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag
    ||| || |||||||| ||||| ||||||||||| || || ||||| || ||||||||||||||||| ||||| ||  ||||||| ||  | || ||| || |   || |||   |  || ||    | ||   || |    |    ||| |    |                                         
----GGCCGTGGACAAGAGCTATCATTTGAAGATGAAGGCCTCGAGGTTTATATTCAGTGAAATAAGCCAGAAGTTCCCGCTCATGCCCTTTACCGCCAGGCAAgt---tttcttctgtaattctatccttctggtgagctcaaatttgcattttccagggag--------------------------------------

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ10608 (Selaginella moellendorffii), 5'ss of exon 6
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCTATCATGCCGTTCTCTGCTAGgtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcactattcttaaaattttatttgttttataataacag
    ||| || |||||||| ||||| ||||||||||| || || ||||| || ||||||||||||||||| ||||||||  ||||||| ||  | || ||| || ||| || |||   |  || ||    |  |   || |    |    ||| |    |                                         
----GGCCGTGGACAAGAGCTATCATTTGAAGATGAAGGCCTCGAGGTTTATATTCAGTGAAATAAGCCAGAAGTTTCCGCTCATGCCCTTTACCGCCAGGCAAgttgttttcttctgtaattctatccttccggtgagctcaaatttgcattttccagggag--------------------------------------