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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGGgtaagtgatgtctgtcaatttcaaatttgtgatttaatggaattgtgttagaaggctttgatgttgttttttgattgagaggatattccttagccatgga...

Basic information

species Glycine max
transcript GLYMA16G18930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18930.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G26120.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGGgtaagtgatgtctgtcaatttcaa--atttgtgatttaatggaattgtgttagaaggctttgatgttgttttttgattgagaggatattccttagccatgga
||||||||||||| ||||||| ||    | ||| || ||||||||||| || ||||| ||||| || |||||||||||||||| ||| |||     ||||    |  ||||    | ||| | | ||| |   || |     ||  |     | |  |  |||   | ||   | |  |  | 
GCTTGACTTGTATCTACCTAAGAACTCTACTGGACCAAAACCAGTTGTGGCGTTTGTGACTGGTGGAGCCTGGATTATTGGgtgagt-atgatacccaatggacactattttcattctaaagcatttgaggacgaggagaaagaactgcaaatatcttacagaatgtcttgtgttgatacag-

upper sequence: GLYMA16G18930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g02530.t01 (Vitis vinifera), 5'ss of exon 4
GCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGGgtaagtgatgtctgtcaatttcaaatttgtgattta-atggaattgtgttagaaggctttgatgttgttttttgattgaga-ggatatt--ccttagccatgga
||||||  |||||||||| ||||| ||  |||| || || ||||||||||| ||||| ||||| || |||||||||||||||| ||| || || |     ||     |  |     | ||| | ||    || ||   ||| |   |       |   || | |||| ||  |||||||      
GCTTGATCTGTATTTACCCAAAAACAGTGATGGGCCAAAGCCAGTTGTTGCATTTGTAACTGGTGGAGCCTGGATTATTGGgtgagtaat-tcagctgcattttccctgatagcaaatatgaatttacagtacaaacatttaaa--tacacaggggcagacatggatgttggccttagctccat-