1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCACAATTACATGCACAGTTTTTGCCTTGTATTTTGGATCTTTGCTAAATGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctcttgaagtgtctgcatcttgggacacaagtaatgaagtaattcaattttgtactacaatgagtaatccccaagcatggtgcttttgtaatt...
species | Glycine max |
transcript | GLYMA16G18380.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTTTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|209706363|gb|BW676325.1|BW676325
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|33389643|gb|CA852850.1|CA852850
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCAEST: gi|22522289|gb|BU081109.1|BU081109
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
EST: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAG ATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
genomic: TGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctc ... ctacctgtagATGCAAACAAAACAGTGTTTTTTCGTCGAGAACTAGCTAAACTATCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACAATTACATGCACAGTTTTTGCCTTGTATTTTGGATCTTTGCTAAATGTTCTCCGAAGACGAGTTGGAGAGGAGGAAAGACTTTTGAAAAACAAAGgtaaaccctcttgaagtgtctgcatcttgggacacaagtaatgaagtaattcaattttgtactacaatgagtaatccccaagcatggtgcttttgtaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccccaa