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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCCTTTACCGTAAGGATAGTCGCTTAGGTTCATCTAAGCAAATGGAGGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatcttctaatctatatattgtttctccttatgaactctaacaattttgcttagctttctaacgatttttataaacttcag

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171364|gb|HO016396.1|HO016396
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6070525|gb|AW099912.1|AW099912
EST:     GCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9986447|gb|BE660555.1|BE660555
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGNGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|23731779|gb|BU764032.1|BU764032
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6455064|gb|AW185747.1|AW185747
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAAGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|298173936|gb|HO017272.1|HO017272
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|7590021|gb|AW705783.1|AW705783
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9986449|gb|BE660557.1|BE660557
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|5770415|gb|AI973589.1|AI973589
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9986446|gb|BE660554.1|BE660554
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6667580|gb|AW279031.1|AW279031
EST:     GGATCTTTACTTTTCTGCAATTGTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGG
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|192301230|gb|FG990180.1|FG990180
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6455714|gb|AW186397.1|AW186397
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|163921421|gb|EH038959.1|EH038959
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|151395749|gb|EV265626.1|EV265626
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|298199322|gb|HO042685.1|HO042685
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6341667|gb|AW164491.1|AW164491
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|7589352|gb|AW705128.1|AW705128
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGA
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9986448|gb|BE660556.1|BE660556
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9986450|gb|BE660558.1|BE660558
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6668142|gb|AW279593.1|AW279593
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGCATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|5753593|gb|AI960880.1|AI960880
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|9899585|gb|BE608553.1|BE608553
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|7589167|gb|AW704947.1|AW704947
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6070716|gb|AW100103.1|AW100103
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6454121|gb|AW184869.1|AW184869
EST:     GATCTTTACTTTTCTGCA-TTGTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGTATAGAGTCAAGGTT
genomic: GATCTTTACTTTTCTGCAATT-TTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTT
EST: gi|9986445|gb|BE660553.1|BE660553
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGGTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|6724637|gb|AW309092.1|AW309092
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
EST: gi|5753417|gb|AI960704.1|AI960704
EST:     GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAG                         ATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT
genomic: GGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatctt ... taaacttcagATTTCTACAATTGGAATAGAGTCAAGGTTAGGTACTGTGATGGGTCATCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGCCTTTACCGTAAGGATAGTCGCTTAGGTTCATCTAAGCAAATGGAGGATCTTTACTTTTCTGCAATTTTAAGCAACGAACAAGAGTATAATCCAGgtattatcttctaatctatatattgtttctccttatgaactctaacaattttgcttagctttctaacgatttttataaacttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA