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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAGgtatttgtcacatacataatgattagtcaactcaatctcattggtactataatttagaaattagaatatgtatcctctgagttgtcttagaaatctgatg...

Basic information

species Glycine max
transcript GLYMA16G15810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
ACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAGgtatttgt-cacatacataatgatta--gtcaactcaatctcattggtactataatttagaaattagaatatgtatcctctgagttgtcttagaaatctgatg
 | |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| || ||||||||||| |  |||  |  |  | |  |  || | ||  |  ||  |   ||   || ||    | | ||  |    |   | | | ||    || | ||  
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagta-atgggattgtattggactgctcaaaccga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796494|gb|AW781891.1|AW781891
EST:     GGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAG                         CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTAT
genomic: GGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAGgtatttgtca ... ttacttgcagCATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTAT