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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatcttttttatttgttttgcctcatgtcatttgatttaatttattaaaggcaatattttttttcataaatcctaactaatgatttttttttcag

Basic information

species Glycine max
transcript GLYMA16G10880.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491370|gb|EH219537.1|EH219537
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|13562679|gb|BG550899.1|BG550899
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|22524450|gb|BU083261.1|BU083261
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|20812913|gb|BQ297391.1|BQ297391
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|7028945|gb|AW458728.1|AW458728
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|209728984|gb|BW651747.1|BW651747
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCACTCGTCACCCTGATGCCACCACTGTAGTTA
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTA
EST: gi|120495789|gb|EH223956.1|EH223956
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|12689187|gb|BG155523.1|BG155523
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|120529139|gb|EH257273.1|EH257273
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|120531755|gb|EH259888.1|EH259888
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|19270067|gb|BM886323.1|BM886323
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGT
EST: gi|6914782|gb|AW396312.1|AW396312
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|6134837|gb|AW133230.1|AW133230
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     GGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: GGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
EST: gi|20813349|gb|BQ297827.1|BQ297827
EST:     ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAG                         GCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT
genomic: ATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatct ... tttttttcagGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGgtggaaatcttttttatttgttttgcctcatgtcatttgatttaatttattaaaggcaatattttttttcataaatcctaactaatgatttttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG