Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCGTAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttcttaaattgttattgtgtttgatatgtttataacaaatcctgttcatatttgttaattgtgttcttttcttgaattatgcag

Basic information

species Glycine max
transcript GLYMA16G10700.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193565675|gb|FK526320.1|FK526320
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACNTTTTGGAAGGTAAGGAGTTGG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGG
EST: gi|151411901|gb|EV281712.1|EV281712
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAAGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAG
EST: gi|214009200|gb|DB990574.1|DB990574
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|9258929|gb|BE347076.1|BE347076
EST:     AGCTAGCTTGCATTTCCTCTCCGCCTGGTCAATGGTG-CAGAGCTGACCG                         CTACCTTTTGGAA
genomic: TGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATG-TGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAA
EST: gi|193341878|gb|FK308042.1|FK308042
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTT-GGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGA
EST: gi|193552948|gb|FK505791.1|FK505791
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAA-CTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193526674|gb|FK486748.1|FK486748
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTA
EST: gi|193508571|gb|FK465434.1|FK465434
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208320596|gb|GE121659.1|GE121659
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|214005418|gb|DB984897.1|DB984897
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193500583|gb|FK464086.1|FK464086
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|192326823|gb|FK018920.1|FK018920
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGG
EST: gi|207804110|gb|GD774959.1|GD774959
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|58019673|gb|CX706415.1|CX706415
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193447234|gb|FK414521.1|FK414521
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAA
EST: gi|193606531|gb|FK559594.1|FK559594
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|151408329|gb|EV278137.1|EV278137
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193411832|gb|FK379905.1|FK379905
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|22932492|gb|BU549631.1|BU549631
EST:     GGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: GGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193554195|gb|FK516292.1|FK516292
EST:     TTTCCTCTCGGCCTGGTCAACGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|209713509|gb|BW679286.1|BW679286
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|213610378|gb|DB984214.1|DB984214
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208256114|gb|GE055669.1|GE055669
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208253688|gb|GE055498.1|GE055498
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAGAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|15288299|gb|BI472190.1|BI472190
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|209700513|gb|BW660900.1|BW660900
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208155866|gb|GD954020.1|GD954020
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|209696785|gb|BW680406.1|BW680406
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|207716198|gb|GD698862.1|GD698862
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|8284176|gb|BE021735.1|BE021735
EST:     TGCTTGCTTGCATCTTC-TCTCAGCCTGGTCGATGTGGCAGAGCTGACGG                         CTACATTTTGTAAGGTGATGAGTTGGAGTTTTAC
genomic: TGCTTGCTTGCAT-TTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTAC
EST: gi|26043915|gb|CA782235.1|CA782235
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193334013|gb|FK300029.1|FK300029
EST:     TGCTTGCTTGCATTTCCTCTCGGCCTGGTCAAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTAGGAGTTTTACATGAAAAAACTCCAGA
genomic: TGCTTGCTTGCATTTCCTCTCGGCCTGGTC-AATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTT-GGAGTTTTACATGAAAAAACTCCAGA
EST: gi|151398148|gb|EV268026.1|EV268026
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAG
EST: gi|193640742|gb|FK587667.1|FK587667
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGG
EST: gi|214007210|gb|DB986202.1|DB986202
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208169358|gb|GD969615.1|GD969615
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|214008593|gb|DB987456.1|DB987456
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208159065|gb|GD951790.1|GD951790
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|192322434|gb|FK014915.1|FK014915
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193342781|gb|FK309057.1|FK309057
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|213606119|gb|DB982420.1|DB982420
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|209715847|gb|BW657455.1|BW657455
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAC
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|213589456|gb|DB981218.1|DB981218
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTCGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193614183|gb|FK562239.1|FK562239
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAG-A
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|22932855|gb|BU549994.1|BU549994
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|31462511|gb|CD404539.1|CD404539
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193407464|gb|FK373596.1|FK373596
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAA-CTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|214008959|gb|DB984519.1|DB984519
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|9203327|gb|BE329551.1|BE329551
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTATGGAAGGTAAGGAGTTGGAGTGTTACATGAAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAA
EST: gi|254319862|gb|GR830886.1|GR830886
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193335610|gb|FK298518.1|FK298518
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATAGAAAAA-CTCCAGA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACAT-GAAAAAACTCCAGA
EST: gi|209713913|gb|BW681918.1|BW681918
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|213603982|gb|DB977065.1|DB977065
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|213591167|gb|DB982909.1|DB982909
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|4260257|gb|AI416753.1|AI416753
EST:     TTGCTAGCTTGCATTTCCTCACGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|208275282|gb|GE068102.1|GE068102
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCAGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAA-CTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|207762128|gb|GD731043.1|GD731043
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193388954|gb|FK356247.1|FK356247
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193341192|gb|FK307972.1|FK307972
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATG-AAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|7640066|gb|AW734375.1|AW734375
EST:     TGCTTGCTTGCAGTTTC-TCTCGGCCTGGTCAATGTGGCATAGCTGACGG                         CTACATTTTGGAGGGTAAG-AGTTGGAGTTTTTCATGAAAAAACTTCCTGA
genomic: TGCTTGCTTGCA-TTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACT-CCAGA
EST: gi|42722533|gb|CK768432.1|CK768432
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|193612340|gb|FK560943.1|FK560943
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
EST: gi|192299558|gb|FG987719.1|FG987719
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATG
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATG
EST: gi|58019335|gb|CX706077.1|CX706077
EST:     TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGG                         CTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA
genomic: TTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttct ... aattatgcagCTACATTTTGGAAGGTAAGGAGTTGGAGTTTTACATGAAAAAACTCCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGATCGTAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGGCGTTTGCTTGCTTGCATTTCCTCTCGGCCTGGTCAATGTGGCAGAGCTGACGGgtaattttcttaaattgttattgtgtttgatatgtttataacaaatcctgttcatatttgttaattgtgttcttttcttgaattatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA