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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagttttgttattacttgaccgcaagctttatgcttttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag

Basic information

species Glycine max
transcript GLYMA16G10260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 2
-GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagtt---ttgttattacttgaccgcaagctttatgct-----tttttgtagacccttaatttgttgtttgtatgattttgagt--ttccatgtag-------------
    | |||| ||  | ||||| |       |  || | |        | ||  | || || | | |||||||||||||||||||||||||||||||||||||||||||| | |   |||  ||   ||||| ||  ||   || |    |  || |     |   | ||  |  || |||   | ||| | | |||  |||   ||  || | |             
GTCTAGTGGTCTGCGGGAAGAGATGTGATTCTGTTGGCATCCCAGCACTCAGTTCTTCATTAAATCTTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatttgcataatctgtttgtattgttgttgttttgacgtatatctcgtgttcaaaataaatatatgcatttcattccctctttat-taattgagagcagttttattttgaaatgattcacag

upper sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G176506_T07 (Zea mays), 5'ss of exon 2
--------------------------GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtcta---gttttgttattacttgaccg-caagctttatgctt-ttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag--------------------
                             | ||||  | || ||||| |    |     || | |        | ||  | || || |   | ||||| |||||||||||||| ||||||||||||||||||||| | |   | |     || | || ||   |    | |  |  ||||  || | ||| | ||  |  || |    ||  |  |   || | | |  |  |                      
CTGAACAGCTACAGCAAGCTAACTGGTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGgtagaatcaaacagagctttgtattgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
-GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtcta---gttttgttattacttgaccg-caagctttatgctt-ttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag--------------------
    | ||||  | || ||||| |    |     || | |        | ||  | || || |   | ||||| |||||||||||||| ||||||||||||||||||||| | |   | |     || | || ||   |    | |  |  ||||  || | ||| | ||  |  || |    ||  |  |   || | | |  |  |                      
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctcgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 2
-GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagt-tattggaaatgtctagttttgttattacttgaccgcaagcttta-tgcttttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag
  ||||| || ||  ||||| ||| | || | |  |  || | |  | ||||| | || ||  |||||||||| ||||||||||||||||| || |||||||||||  |||   | | | |  || ||||||    | || |   |||  | |   ||||  ||     || |    |||||    | | ||||             
GTAGATTAGTCTGCGGAAAGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagtacatt---atttttttattgtgttatggagttacagtctgctacaatagattttgata-----ttga--cattgttctcgtaactttgcag----------

upper sequence: GLYMA16G10260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 3
-GAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagttttgttattacttgaccgcaagctttatgcttttttgtagacccttaatttgttgtttgtatgattttgagtttccatgtag---------
  | |||||| ||   |||||| | || | |  |||   | || ||  |  |  | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||   |||  |||  ||| || |  | |    |  |   |  || ||     | |    |   || |   | || ||         | |   ||| |         
GCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagtt-tttacaattcctaaatttcttttaccatagatgtcaatatagtgtttgaagatggttaatgtcttcgccttatgcatcccacaacatatatgtgttgctcttgcag