1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAGGATTTGTGGATGACGCTACTACTTCCCATTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatatggcttcttttttttaaattctatcttcatcaaatcttttttagtggtgcccgggagattaccatcttattaatcacacagattgggttgttgagtttatag
species | Glycine max |
transcript | GLYMA16G09930.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAG GTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCTEST: gi|193486080|gb|FK451300.1|FK451300
genomic: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatat ... gagtttatagGTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCT
EST: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAG GTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCTEST: gi|208315349|gb|GE112697.1|GE112697
genomic: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatat ... gagtttatagGTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCT
EST: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAG GTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCTEST: gi|21601805|gb|BQ612136.1|BQ612136
genomic: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatat ... gagtttatagGTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCT
EST: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAG GTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCT
genomic: CTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatat ... gagtttatagGTGCCAGATTATTTGTGCTGTAGAATCACACTCGACATTTTTCATGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGATTTGTGGATGACGCTACTACTTCCCATTCAGAACAATTAGAGGCTTTAGAAAGAGTCTTCAATACAGCTGCAGAAGCTGACATACCTACTGAGgtgtgcatatggcttcttttttttaaattctatcttcatcaaatcttttttagtggtgcccgggagattaccatcttattaatcacacagattgggttgttgagtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA