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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAAgtaagtctttaaagattttcatttttatttttgttatctgatatactaatattcctgagttgtgtttcttgttgatgtaataaggataactctatgcata...

Basic information

species Glycine max
transcript GLYMA16G09230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G063775_T01 (Zea mays), 5'ss of exon 5
GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAAgtaagtctttaaagattttcatttttatttttgttatctgatatactaatattcctgagttgtgtttcttgttgatgtaataaggataactctatgcata---
|  ||||||| ||||||||||||||||| ||||| || ||||| || |||||    ||  | || || ||    ||| |  |  | ||| |||| |  |||||||| ||      | |    | || |  ||||| |||  | ||   | |    | | | |  ||| |      |   |    |  |  ||  |   |    
GAATTGTTGTCCTTGCTGAAAGTTTTGGTCATTCTGTTTTCAAAGACTCACTTCTCCGCATCTTTCAGTCAACAGATGACAACCTTGGTTTATCATTCAAgtaagtgttcttctgtctatcctatt-tgattgtt-tctagtctagagagaagattaaat-gcatttgtaaggacttggactgagtcagttcagtttttttac

upper sequence: GLYMA16G09230.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 4
GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAAgtaagtctttaaag-attttcatttttatttttgttat-ctgatatactaatattcctgagttgtgtttcttgttgatgtaataaggataactctatgcata--
|  ||||||| ||||||||||||||||||||| |||| || | ||| || || || | |||||| || ||   |||||||||| | |||||||| || |||| |||||||   | | |    | |  |||   ||| |  || |  | | | ||   | |||  | ||| |  ||    |  | |   | |    |||  |   
GAATTGTTGTGCTTGCTGAAAGTTTTGGCCATGCAGTTTTTAGGGACTCTCTTAAACATGTTTTTCAGTCAACTGATTATGATCTTGGTCTATCATCCAAgttagtctttcttgtactcatgtctgcattcaagttgtgttggttaaatgacata--ttagtaatatttgt--ttagaatcttgaaatttatgtcatggtttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12497295|gb|BG047495.1|BG047495
EST:     CTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAA                         TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTAT
genomic: CTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAAgtaagtcttt ... ctattcgcagTGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTAT
EST: gi|7685725|gb|AW756373.1|AW756373
EST:     CTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAA                         TGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTAT
genomic: CTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAAgtaagtcttt ... ctattcgcagTGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTAT