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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttggtgatgatttttttttttttgtttctttctgttataagatgcaatctcaaatattgagttttgatcatttgtgctgcatgtggaacctgc...

Basic information

species Glycine max
transcript GLYMA16G08470.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135790|gb|BU926300.1|BU926300
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAAG-AGGGAAAGCAGCTGCAAAGATAATAGCCCTTGCACTGGATTTGG
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAA-GTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGG
EST: gi|298166108|gb|HO009079.1|HO009079
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: gi|298179589|gb|HO026970.1|HO026970
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACT
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACT
EST: gi|19345789|gb|BM890669.1|BM890669
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: gi|151412168|gb|EV281980.1|EV281980
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: gi|254340856|gb|GR854584.1|GR854584
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
EST: gi|151410428|gb|EV280243.1|EV280243
EST:     GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT                         AGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA
genomic: GTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttg ... gggaatccagAGAAGTAGGGAAAGCAGTTGCAAAGATAATAGCCCTTGCACTTGATTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATTgtatgttttggtgatgatttttttttttttgtttctttctgttataagatgcaatctcaaatattgagttttgatcatttgtgctgcatgtggaacctgc

- - - - - - GGTGGA
- - - - - -  GTGGAG
- - - - - - - TGGAGG
- - - - - - - - - - - -  CATGGA