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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctcatatattattagtacttttagtagtaaatcagtgatgttggtgtcacacattgaaatgtaattttaagtcaatgatcagtattaatcatt...

Basic information

species Glycine max
transcript GLYMA16G08200.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666502|gb|AW277896.1|AW277896
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|9564950|gb|BE474459.1|BE474459
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|193511651|gb|FK470446.1|FK470446
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|15000694|gb|BI321508.1|BI321508
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|208277990|gb|GE074913.1|GE074913
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|7686453|gb|AW757101.1|AW757101
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTTGAATCAAGGAA                         GCANGAGGGTTTATTCTTAGATGATGAGATTGCCTTCAATGATGCTGTTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|209725412|gb|BW651556.1|BW651556
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCCATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|208146298|gb|GD948403.1|GD948403
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|193476691|gb|FK439538.1|FK439538
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|21888894|gb|BQ742107.1|BQ742107
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|151398998|gb|EV268869.1|EV268869
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|192299164|gb|FG992895.1|FG992895
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|7232940|gb|AW568291.1|AW568291
EST:     CAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: CAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|209702008|gb|BW683185.1|BW683185
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGAT
EST: gi|192296912|gb|FG990258.1|FG990258
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|9819749|gb|BE555262.1|BE555262
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|192315290|gb|FK009610.1|FK009610
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGGGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|10254732|gb|BE822498.1|BE822498
EST:     GGNTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|21255947|gb|BQ452835.1|BQ452835
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
EST: gi|9565390|gb|BE474899.1|BE474899
EST:     GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAG                         GCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT
genomic: GGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctc ... catgctgcagGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGgtgatttctcatatattattagtacttttagtagtaaatcagtgatgttggtgtcacacattgaaatgtaattttaagtcaatgatcagtattaatcatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG