Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAATTGAACTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaacacttcgtaatcattgaagtgtatgttttgtcataagcagatatttcacttctaatggatttcatttcattttggtttgtgactcagttcaattgatatattattctctttgttttcag

Basic information

species Glycine max
transcript GLYMA16G06750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06750.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G046743_T01 (Zea mays), 5'ss of exon 4
GCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAATTGAACTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaa-gtaaacacttcgtaatcattgaagtgtatgttttgtcataagcagatatttcactt--ctaatggatttcatttcattttggtttgtgactcagttcaattgatatattattctctttgttttcag
|| |||||||||||||||||||| || || ||| ||||||||||  ||  |||    ||  || ||||||| ||| | ||    || |     ||||| ||||| | |  | |  ||| |    |||| || |  | |       |   |     |||||   |||| |   | ||     |     | ||                                        
GCCATGCCAGTGTTTGACATGATAGAGACGGTGCTGGTGAAGAAGCTGCGCTTCCCTCCCGGTCTGACACTGCGTCTCATCTCTCGGACCGCCTATGTTGgtaatgaacgccccccgtcaaatctgaactgaacttgtacagccgaattggcgcctcactgaactaaggtgatgcaacctgtacgtatgtgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330084|gb|GR839637.1|GR839637
EST:     CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
EST: gi|151401345|gb|EV271159.1|EV271159
EST:     CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
EST: gi|23731396|gb|BU763816.1|BU763816
EST:     CACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
EST: gi|254330083|gb|GR839636.1|GR839636
EST:     CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
EST: gi|254343288|gb|GR856992.1|GR856992
EST:     CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
EST: gi|254343289|gb|GR856993.1|GR856993
EST:     CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGG                         CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG
genomic: CTTTAAACCTAGTATGACACTTCGTTTTATTGTACGCAATCTGTATGTGGgtaagtaaac ... ttgttttcagCATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAG