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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagccctgttcgttttaatccacatgctctagcttttcagatgtatacagcttcatatttgctccattattcttgcag

Basic information

species Glycine max
transcript GLYMA16G05670.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 4
AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagccctgttcgttttaatccacatgctct----agcttttcagatgtatacagcttcatatttgctccattattcttgcag
|||||| |||||||| ||  | ||||| ||||| |||||||||||||||||||| |||||  | || |  |||||||| ||| | || || || || |||||| |    |  | |   ||||| ||  ||||    ||   |   | | | |       |||   |    | || |||||||||
AACTCCTGCCTCCATTGTTCTAATAATATACACATTCATATCAATGTGGTTTGTTGGTGGCTTAACAGTTTTCCATTTATATCTCATCAGCACGAACCAGgtatgttgcgaccatcc-aatccccaccctctcttaaggaatcacggtatctctgtaaccattgatttatctttgttcttgcag

upper sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 4
AACTCCAGCCTCCATAGTGTTGATAATTTACACCTTCATATCAATGTGGTTTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaa-gccctgttcgttttaat-ccac-atgctctagct----tttcagatgtatacagctt-catatttgctccattattcttgcag-----------------
 || || |||||||| ||| | ||| ||||||||||||||||| |||||||||| ||||| || ||||| |||||||| ||| |||| ||||| |||||||||| |  ||  || |  |||| | |  || || ||||     ||| || |  | | |   | | ||   ||   ||| | |||                     
GACCCCTGCCTCCATTGTGCTAATAGTTTACACCTTCATATCAGTGTGGTTTGTCGGTGGCCTAACTGCATTCCATTTATATCTGATCAGTACAAATCAGgtaacgggctcatcttcctaatgctatgattctgtagccgaaattttaggtcaaaatattgtgcctaacagcagaattttccttctctattccattcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591023|gb|AW706764.1|AW706764
EST:     TTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAG                         ACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAATCCATAT
genomic: TTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagccctg ... attcttgcagACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAATCCATAT
EST: gi|298192663|gb|HO033097.1|HO033097
EST:     TTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAG                         ACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAATCCATAT
genomic: TTGTAGGTGGTCTCACTGCCTTCCATTTGTATTTGATAAGTACCAATCAGgtaagccctg ... attcttgcagACTACATATGAAAACTTCAGATACCGATATGATCGGCGAGCCAATCCATAT