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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaacttttagtgatgtagataagattttttctcttgggttttattgttccagaaaattcagcaccataaacatgactgaaagtaagagtttagctttag...

Basic information

species Glycine max
transcript GLYMA16G05580.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaacttttagtgatgtagat-----aagattttttctcttgggttttattgttccagaaaattcagcaccataaacatgactgaaagtaagagtttagctttag------
|||||||||||||||||||||||| | || || ||| ||||||| |||||||||||   || | ||||||||||||||||  ||||| |  | ||||||||| || || |    |    ||     | || ||| ||  |||  | |  |||  | |  |   | | |||       |    |||    |||||| | | |  |       
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaac-attagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag

upper sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaac--ttttagtgatgtagataagattttttctcttgggttttattgttccagaaa--attcagcaccataaaca-tgactgaaagtaagagtttagctttag
|||||||| ||||||||||||||| | ||||  |||||||| || ||||||||||| | || | ||||||||||||||| ||| |||||||| ||||||||| |    ||   |  |||| || |   | ||  |    | || || | |  |   |   |||||   | |||||   |   |   | |   ||   |  ||   
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgagaacttcctttttgtaaatta---tgttgatgagagcttatactttcacttgatttattcactgctataaatggtccttttcaattccagcaaaaattc--

upper sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCTTGCCTTGCACTGGCTGTTGCAGCACTTAGCTCTGATATTGATCTTGTACTGATTTTGGCGAACCCAGgtaa------------cttttagtgatgtagataagattttttctcttgggt--tttattgttccagaaaa--ttcagcaccataaacatgactgaaagtaagagtttagctttag
|||||||| || || ||||||||| | ||||  |||||||| |||||||||||||| | ||   |||| || ||||||| |||||||||||| ||||||||| |            || | | |||||| |||  ||  ||     || | |  ||| || | ||   ||   ||  | |       ||  ||| |||  |               
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgagaagctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggca-aacttaaaaca---------------