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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaacttttagtgacgtagataaaatttattttcctggattttattgttccagacaattcaacaccattaacatgactgaaagtaagagcttaactttag...

Basic information

species Glycine max
transcript GLYMA16G05570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaacttttagtgacgtagataaaatttattttcctggattttattgttccagaca---attcaacaccattaacatgactgaaagtaa-gagcttaactttag------
|||||||||||||||||||||||| | || || ||| |||| || |||||||||||   |||||||||||||||||||||  | ||| |  | ||||||||| || || |         ||    |     || ||   || |||   |    |||    |   |   | |   |  || |  |  ||| |||  |   |  |       
CCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAGgtgacgttgatcctttcttatttcctaggactttctcatttgtatgtgtttgaacattagtcttatcacgtcgtctagatttgatctaaagagtattgttgcatttgcag

upper sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaac--ttttagtgacgtagataaaatttattttcctggattttattgttccagacaattcaacaccattaaca-tgactgaaagtaagagcttaactttag
|||||||| ||||||||||||||| | |||| ||||||||| || ||||||||||| | |||||||||||||||||||| ||| |||||||| ||||||||| |    ||   |   ||| || |  || ||        ||  | |   |  |   | ||||   | || ||   |   |   | |   |||  || ||   
CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgagaacttcctttttgtaaattatgttgatgagagcttatactttcacttgattta-ttcactgctataaatggtccttttcaattccagcaaaaattc--

upper sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCGCTGGCTGTTGCAGCACTTAACCCTGATATTGATCTTGTACTAATTTTGGCGAACCCAGgtaacttttagtgacgtagataaaatttattttcctggattttattgttccagacaattcaacaccattaacatgactgaaagtaagagcttaactttag---
|||||||| || || ||||||||| | |||| ||||||||| |||||||||||||| | ||| ||||| || ||||||| ||| |||||||| ||||||||| |     ||   |     ||  | | || ||  |||    |        ||   |||    |    ||  ||   |   | |    |   ||||| |    
CCCATATACCTAGTCGGAGAATCTCTCGGAGGATGCCTTGCTCTGGCTGTTGCAGCCCGTAATCCTGACATCGATCTTGCACTGATTTTGGCCAACCCAGgtgaga---agctcctctcctatgaatgatgttgatgggagcttagagattagctgattttttatgcctataatcctttggaattcctggcaaacttaaaaca