Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag

Basic information

species Glycine max
transcript GLYMA16G05530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 3
------------------------GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgac--tggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag
                        |||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||||| ||   | |    ||  ||   |||   || |   ||| | |   ||||  ||  |||   | | ||| |  || | || ||       ||| | |||        | ||     
ATCAATGCTTTGTACATGTTGAAGGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGTAAgtaagcatgccattgcacgc-aca---acctagttca-tgtttcttgcccatactgatgttcggatgctgtttctggtgttacc----tctgcgtggaaatctgaatat-----

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067476_T02 (Zea mays), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgac--tggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag
|||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||||| ||   | |    ||  ||   |||   || |   ||| | |   ||||  ||  |||   | | ||| |  || | || ||       ||| | |||        | ||     
GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGTAAgtaagcatgccattgcacgc-aca---acctagttca-tgtttcttgcccatactgatgttcggatgctgtttctggtgttacc----tctgcgtggaaatctgaatat-----

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067476_T01 (Zea mays), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttga--ctggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag-----------
|||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||||| ||   | |    ||  ||   |||   || |   ||| | |   ||||  ||  |||   | | ||| |  || | || || |  | | |       |  ||      |||||            
GAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGgtaagtaagcatgccattgcacgc-aca---acctagttca-tgtttcttgcccatactgatgttcggatgctgtttctggtgtt-acctctgcgtggaaatctgaatatgctctcatactatgttcag

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G376727_T03 (Zea mays), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag
||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||||| ||   |  || |  |  | ||    ||  |    |   | |   || || ||  ||| ||    | | || ||| |  |  |    ||| | |||        | ||     
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc--atgccattgcatgcgcattgta---gttcatgtttctttctgatactga-tgtttggatgctgtttctggtgctac-ctctgcatggaaatctgaatat-----

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G376727_T02 (Zea mays), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag
   || || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||||| ||   |  || |  |  | ||    ||  |    |   | |   || || ||  ||| ||    | | || ||| |  |  |    ||| | |||        | ||     
---GCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAAgtaatc--atgccattgcatgcgcattgta---gttcatgtttctttctgatactga-tgtttggatgctgtttctggtgctac-ctctgcatggaaatctgaatat-----

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttg-acagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattcta-cttggttggaccgacatctcag------
||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||||| ||   | |    ||  |   | |  ||        |   | ||   | || |||||     || |||| ||  |  |     || ||   |   ||  |   |   |||   |       
GAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGgtaagtaatcatgccattgcatgcgcattgtagttcatgtttctttctgatactgatgtttggatgc-tgtttctggtgctacctctgcatggaaatctgaatatgctctcatactatgttcag

upper sequence: GLYMA16G05530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 5'ss of exon 4
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag
||||||||||||||||| ||||| ||||| ||  | ||| | |  |||||||| |||||||||||||| |||||| ||||||     | | ||  |  |||||| || ||||| ||||  ||   |        |    ||||   ||  |  ||  | | |  |  |   | | |            
GAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCTCCAGAGAAGAAGTTTGAGTGGgtaagtttcc-----cataaaagtagcagttatattaatcattatct-ttttatgcacctttttctgtgttgacttaagccttt-tctttgtttttccatggaatta---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995718|gb|CF807307.1|CF807307
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192309917|gb|FK001461.1|FK001461
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|213589498|gb|DB981232.1|DB981232
EST:     GCCTTTGGACGTTCATTT-AGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: GCCTTTGGACGTTC-TTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|58019764|gb|CX706506.1|CX706506
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|12772421|gb|BG237348.1|BG237348
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|151408820|gb|EV278628.1|EV278628
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|13791399|gb|BG653990.1|BG653990
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|31465373|gb|CD407401.1|CD407401
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|213617119|gb|DB963592.1|DB963592
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|17401673|gb|BM178455.1|BM178455
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192328456|gb|FK020730.1|FK020730
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|6914631|gb|AW396153.1|AW396153
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|26056181|gb|CA799095.1|CA799095
EST:     TGCCTTTGGACGTTCTTTCTGATAAACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|14991791|gb|BI317464.1|BI317464
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192310732|gb|FK001156.1|FK001156
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|7589987|gb|AW705750.1|AW705750
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|254347231|gb|GR853480.1|GR853480
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|254347232|gb|GR853481.1|GR853481
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|254344547|gb|GR855418.1|GR855418
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|19269510|gb|BM885766.1|BM885766
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|31456205|gb|CD398233.1|CD398233
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192326907|gb|FK019199.1|FK019199
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|7925531|gb|AW831557.1|AW831557
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|19268686|gb|BM884942.1|BM884942
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|151410082|gb|EV279890.1|EV279890
EST:     TGCCTTTGGACGCTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|208317318|gb|GE117499.1|GE117499
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192296517|gb|FG989838.1|FG989838
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|17020635|gb|BM091669.1|BM091669
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|192294092|gb|FG986181.1|FG986181
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|21285290|gb|BQ473161.1|BQ473161
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|6069921|gb|AW099507.1|AW099507
EST:     CTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: CTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|58019284|gb|CX706026.1|CX706026
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|16997127|gb|BM086499.1|BM086499
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|23064011|gb|BU578784.1|BU578784
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|21994234|gb|BQ785762.1|BQ785762
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|57574562|gb|CX547537.1|CX547537
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|7286236|gb|AW598723.1|AW598723
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|31561271|gb|CD487109.1|CD487109
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|254345416|gb|GR855859.1|GR855859
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|19935021|gb|BQ080051.1|BQ080051
EST:     AGAAGTTTGAATGG                         GCTAAG
genomic: AGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|31460384|gb|CD402352.1|CD402352
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|9439886|gb|BE440398.1|BE440398
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|11688866|gb|BF596542.1|BF596542
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|151403836|gb|EV273646.1|EV273646
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGGGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|4306520|gb|AI443916.1|AI443916
EST:     CTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: CTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|20814723|gb|BQ299201.1|BQ299201
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG
EST: gi|31462452|gb|CD404480.1|CD404480
EST:     TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG                         GCTAAG
genomic: TGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttcc ... gacatctcagGCTAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGGgtatgtttccttatactttaacttgacagttacatgaatcagtatcaattgcttatgttgactggcatgttactttttgttttcatgtattctacttggttggaccgacatctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT