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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGgtttgtgcataatggcatatggtacttgagatgcttgattttgctgctaatagttgctgatgtgtgtatttttgctgatgaag

Basic information

species Glycine max
transcript GLYMA16G05180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGgtttgtgcataatggcatatggtacttgagatgcttgattttgctgctaatagttgctgatgtgtgtatttttgctg-atgaag
||| ||||||||||| || |||   |   |||| ||||| || |||||||| || || ||||||||||| ||||||||||| |  |||||||| ||||||||||||  | |    | |    || |     ||  |      | | || |||     |  | |   |  ||||| || ||||||
GGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGgtttgtttaaacaaactttcactaatgcttgtgtgttgccgggattcttataa--aatagttttcttgcttttggtggatgaag

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
GGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGgtttgtgcataatggcatatg---gtac-----------ttgagatgcttgattttgctgctaatagttgctgatgtgtgt-atttttgctgatgaag------------------------
||| |||||||||||||||||||  || || || |||||||||||||| |  ||||| |||||||| |||||||||||||| || ||||||||||| ||||||| |   || |    ||     ||||           |||| ||   |   | |  ||   ||  || || ||||   | |  |||||||||                            
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctat--tttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700073|gb|BW656229.1|BW656229
EST:     ATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAG                         CTTGACAAGATACTTCTGAAGAAATATTTTGAAGAGCATCATCATGATGAC
genomic: ATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGgtttgtgcat ... gctgatgaagCTTGACAAGATACTTCTGAAGAAATATTTTGAAGAGCATCATCATGATGAC