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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTATAGCCGATCACGATCTACATTGTGGACCAAAGGAGAAACCTCTAATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcacttcctttttttctcattggattatttaatttttccttttccttttggtatcacaaggtatgttgattactttttctctgttaactactcttctcag

Basic information

species Glycine max
transcript GLYMA16G05140.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G31860.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTCTATAGCCGATCACGATCTACATTGTGGACCAAAGGAGAAACCTCTAATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcacttcctttttttctcattggattatttaatttttccttttccttttggtatcacaaggtatgttgattact-ttttctctgttaactactcttctcag
||||| ||| |||||| ||||||| || ||||| || ||||| || || ||||| || |||||| |||  ||||| | | ||||||||||||||||||| ||| |   ||    |    | ||    || | | |||      || | |||       || ||  |   ||| |  || ||||||| |                 
ATTCTTTAGTCGATCAAGATCTACCTTATGGACTAAGGGAGAGACATCCAATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatg---tttgcgtggaccacag-atatgaatcaatgcagtgttattctt-------cataaact-cattggtctctattttctcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295469|gb|FG987083.1|FG987083
EST:     ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCT                         ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
EST: gi|151409476|gb|EV279284.1|EV279284
EST:     ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCT                         ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
EST: gi|6747878|gb|AW318334.1|AW318334
EST:     ATAATNTTATCAATGTTCACGATGTCTNTATTGATTGTGATCGTGATTCT                         ATAATATACCTGNGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
EST: gi|26058540|gb|CA801454.1|CA801454
EST:     ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCT                         ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
EST: gi|19934822|gb|BQ079852.1|BQ079852
EST:     ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCT                         ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
EST: gi|23056166|gb|BU577706.1|BU577706
EST:     ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCT                         ATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA
genomic: ATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcactt ... ctcttctcagATAATATACCTGGGAAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAA