1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgtcattcataagtttggattaggaaaaaagtgcacttaattaccgaacaaataactcatatttaacaaaagaagtaaaagaagaaaatcttc...
species | Glycine max |
transcript | GLYMA16G04770.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTGAGTGGAAACCAAGAATGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCAEST: gi|26057562|gb|CA800476.1|CA800476
genomic: GTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCA
EST: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|9902312|gb|BE611280.1|BE611280
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|151404717|gb|EV274531.1|EV274531
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: GCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTGCTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|4293036|gb|AI441990.1|AI441990
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|23732353|gb|BU764336.1|BU764336
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|151409575|gb|EV279383.1|EV279383
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|13181122|gb|BG352462.1|BG352462
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CCGAT-CAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACTEST: gi|5508917|gb|AI855475.1|AI855475
genomic: CCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
EST: CGATGCAGTCTT-AGCGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGG GTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
genomic: CGATGCAGT-TTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgt ... ccacatgcagGTAACAATTAACTATCTACTGGGAAACTTGGGAAAGCATTATTCAGAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGTGACATGCTCAAGAACAGAAGCACACTGAACGTTGGGGCCGATGCAGTTTCAGTGTTGAGTGGAAACCAAGAAGGAGCTTATCAATGGgtatgaatgtcattcataagtttggattaggaaaaaagtgcacttaattaccgaacaaataactcatatttaacaaaagaagtaaaagaagaaaatcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT