1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTAGGGATATGCTGAGTAACAGAAGTACCCTGAACCTACAATCTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgacttaattacgaaactagtaattttattcgtgacacatttttttttttgttaaatatatacttctatttgttcacttgatttcatatctcttacc...
species | Glycine max |
transcript | GLYMA16G04760.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACGEST: gi|151400776|gb|EV270590.1|EV270590
genomic: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
EST: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACGEST: gi|10845170|gb|BF068331.1|BF068331
genomic: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
EST: TGATGCCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACGEST: gi|213590175|gb|DB963794.1|DB963794
genomic: TGATG-CAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
EST: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACGEST: gi|20448957|gb|BQ253081.1|BQ253081
genomic: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
EST: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACGEST: gi|8403388|gb|BE059022.1|BE059022
genomic: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
EST: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGG GTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
genomic: CTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgactta ... ttttctctagGTGGCATTGAACTATCTATTGGGCAATTTGGGAAAAGTGATTTCAAAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGGGATATGCTGAGTAACAGAAGTACCCTGAACCTACAATCTGATGCAGTAACTATTCTTGATGGAAACCAAGAAGCTGCTTATATGTGGgtacgacttaattacgaaactagtaattttattcgtgacacatttttttttttgttaaatatatacttctatttgttcacttgatttcatatctcttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT