1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactaggatcttcatttcttaattccttataagcatgctttcaatgtctaaagttttcattttcttatctttag
species | Glycine max |
transcript | GLYMA16G04750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG GTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCAEST: gi|192323530|gb|FK017111.1|FK017111
genomic: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactagga ... ttatctttagGTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCA
EST: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG GTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCAEST: gi|192331687|gb|FK019992.1|FK019992
genomic: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactagga ... ttatctttagGTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCA
EST: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG GTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCAEST: gi|6566238|gb|AW233919.1|AW233919
genomic: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactagga ... ttatctttagGTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCA
EST: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCG GTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCA
genomic: CAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactagga ... ttatctttagGTTAGGGATTTGCTCAAGAACAGAAGTACCCTGAACACTCAACCAGATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACTGCAGGTTTAAGGCTTTTGGAAGGGGATGCTTCTGAAAGGATATTGCAAGCGgtaactaggatcttcatttcttaattccttataagcatgctttcaatgtctaaagttttcattttcttatctttag
- - - - - - - - - - - TGGAAG