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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatttcaaggttctatagttccattattcgttctgtaaaaggtttgattttttatgtttgttattaaacatttagcactttaactctatattcattctacag

Basic information

species Glycine max
transcript GLYMA16G03840.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753628|gb|AI960915.1|AI960915
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|7146563|gb|AW508485.1|AW508485
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|6916457|gb|AW397987.1|AW397987
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|208319902|gb|GE116317.1|GE116317
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|5753645|gb|AI960932.1|AI960932
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT
EST: gi|213616958|gb|DB959270.1|DB959270
EST:     TTATTAGCTGTAGCGAGGAAAAACAACCAG                         ATTGAAGTTTTGAGCCCTGTAAATGGAGATATTCAGGCTACAATCACGGAT
genomic: TTATTAGCTGTAGCGAGGAAAAACAACCAGgtaaattatt ... cattctacagATTGAAGTTTTGAGCCCTGTTAATGGAGATATTCAGGCTACAATCACGGAT