Sequence
atgc intronic sequence ATGC exonic sequenceTTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctagctttgttgccaattataattagtttcaatacctgtaagagcaaaatgtgttattagtcattcttactctcaaatttaaagtccacagtactgattctctcccctttctttttctgcag
Basic information
species | Glycine max |
transcript | GLYMA16G03650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctagctttgttgccaattataattagtttcaatacctgtaagagcaaaatgtgttattagtcattcttactctcaaatttaaagtccacagtactgattctctcccctttctttttctgcag
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TTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGgtaa--actattaaactcattaact------ctctcctgcaatctgcaag-----gcagt--ctttaggaatgtgaatattaggaaataacttttactttgtgggttgatttgtttag-------------------------------
upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
TTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctagctttgttgccaattataat-tagtttcaatacctgtaagagcaaaatgtgttattagtcattcttactctcaaatttaaagtccacagtactgattctctcccctttctttttctgcag
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TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6747050|gb|AW317506.1|AW317506EST: TGTCAG-TAGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGG TTACGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAGAAGAGTGA
genomic: TGTCAGCT-GATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ttttctgcagTTACGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAGAAGAGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCTGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctagctttgttgccaattataattagtttcaatacctgtaagagcaaaatgtgttattagtcattcttactctcaaatttaaagtccacagtactgattctctcccctttctttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT