Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatatatttttggctctttagctgataaacagttgcaattctgttccaaccattgagacaatgattaacaagtttatcttattgacacag

Basic information

species Glycine max
transcript GLYMA16G01960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 5'ss of exon 4
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatatatttttggctctttagctgataaacagttgcaattctgttccaaccattgagacaatgattaacaagtttatcttattgacacag--------------------------------------
|| || |||||||| ||||  ||||| |||||||||||||||||  | |||||||||||||||||||||  ||  |    |  || | ||       |  |  || | | ||      |   | | ||   ||  ||  |   | |     |||                                         
GAACCAGTTCTTCCTGGTTCATTCCTCCGAGCCAGGGCCATTGGTCTCATGCCTATGATTGACCAGgtaagtaaatcaatccattcatct--ctgctaagtcaaactttattagggagaaaaaaataacttttgtcatttaagtatcggcaacaagcttacactgcacctgcatttttttccgtttcatgaacag

upper sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G46860.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatatatttttggctcttt-agctgataaacagttgcaattctgttccaaccat-tgagacaatgattaacaagttt---atcttattgacacag-----------------------------------------------------------
|| || || |||||||| |||||||| || || || ||||||||||| ||||| |||||||| ||||| |  ||   |   ||||  || | ||  | |  |||||         |   || |   | ||  || | |||  ||   |||  |   |  ||                                                            
GAACCAGTGCTTCCCGGATGTTTCCTCCGTGCTAGAGCCATTGGATTAATGCCCATGATTGATCAGgtttgcatagatctttcttagagatcatctaaaagtgcaagctctagaaattgatattgcataagaatcatcaaacttgcaatccaagaaatccaaaatttacatatgagctttgatcttggtactaaatatggctttgccggtgaacgtttcag

upper sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtata---tatttttggctctttagctga---taaacagttgcaattctgttccaaccattgagac-------aatgattaa------caagtttatcttattgacacag---------
|| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |   ||   |||     | |   ||   |      ||    |  |  || || | || ||         |||| |         |||  || | || ||| | | |         
GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttag

upper sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgta-tatatt----tttggctctttagctgataaacagttgcaattctgttccaaccattg-agacaatgattaacaagtttatcttattgacacag
|||||||| ||||| |||||||| || || ||| | || ||||| || |||||||||||||||||||||  ||  |    ||| | | || |  |        | | ||| | |||   |||||||| ||  |||  ||      |||   | |   | | ||
GAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcctaagctttagtttttcatgtttccttgtgcttcaagtttgtgt-aaccattgtagctaattctttggggttttggttga--aataaag

upper sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 5'ss of exon 5
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatatatttttggctctttagctgataa-acagttgcaattctgttccaacca-ttgagacaatgattaacaagtttatcttattgacacag-
|| || ||| |||| || ||||| || |||||||||||||||||  ||||||| |||||||| |||||  || |  ||  ||||  |||  || |  ||      | |   |  ||   | ||||| ||      |   ||||    ||||| | ||   
GAACCAGTTGTTCCTGGCTGTTTTCTTCGAGCCAGGGCCATTGGGCTGATGCCCATGATTGATCAGgtg-atgtcattt-ctctcaagcaaatcatgcaaccattagttcttcacagtgagttgaggcatatgaaattcagttc--tttattcataccag