1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTgtgagtgcactttttcattatcagtgccaaaatgctatgcttggaaatcagaggaattagatttcatttcag
species | Glycine max |
transcript | GLYMA16G01410.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATACTATTGCTATGAAACTTAAAGGAGATGG-AGATGTTATATATCTACT GGGTGGTCTTGTGAGTATTGTGACCGGGATGATTTTGGTGCAGATCTACACEST: gi|208216158|gb|GE012090.1|GE012090
genomic: ATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTgtgagtgcac ... ttcatttcagGGGTGGTCTTGTGAGTATTGTGACCGGGATGATTTTGGTGCAGATCTACAC
EST: TACTATTGCTATGAAAACTTAAAGGAGATGGAAGATGTTATATATCTACT GGGCGGTCTTGTGAGTATTGT
genomic: TACTATTGCTATGAAA-CTTAAAGGAGATGGAAGATGTTATATATCTACTgtgagtgcac ... ttcatttcagGGGTGGTCTTGTGAGTATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTTAAAGGAGATGGAAGATGTTATATATCTACTgtgagtgcactttttcattatcagtgccaaaatgctatgcttggaaatcagaggaattagatttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG