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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAGgtactgaatttgatgaatggatggcaaacatgatttcactaaagctgaacaaactactcagctacagtaatacttgtgtttcag

Basic information

species Glycine max
transcript GLYMA16G00410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 5
TTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAGgtactgaattt-gatgaatggatggcaaacatgatttcactaaagctgaacaaactactcag--ctacagtaatacttgtgtttcag----------------------------------------------------------------------------------------------------------
 ||||| ||||| |||||||| || |||||||||||||| || ||||| ||| | |||||||| |||||||||||||| ||||| ||  | ||||| |||||  |||||| | |  |   |||     ||  |  |   | | | | |  |||||  |  |  ||| |  | || | ||  || |                                                                                                           
CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttctcactagctgcttcatgtt-attaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag

upper sequence: GLYMA16G00410.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ23703 (Selaginella moellendorffii), 5'ss of exon 5
TTTGCCATTCATAACTGCCACGGCTGATGGACCCAAACATATTGAGACCACCATCACAAGGGCTAAATTTGAGGAATTGTGTTCAGATCTTCTTGACAGgtactgaatttg-atgaatggatggcaaacatgatttcactaaagctgaacaaactactcagctacagtaatacttgtgtttcag
 ||||| ||||| || || || || ||||| || || ||||||||  | || || ||  ||||||| ||||||||||||||||||||| | || |||||||| |   |||   |   ||  |  |         |||| ||     |   |   | ||      |||                 
CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAACTATGACTCGGGCTAAGTTTGAGGAATTGTGTTCAGATTTGCTGGACAGgtagtctctttttgtctttgagttacgtttgcacattcaata---tcgtgtacttttcttgctcccag-----------------