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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGAATATGTTCCTGAAACTGTGAATCGCATCGCCAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatttcttgcttctcagttggatctcgaaattcatattcatataataatagcaagaggcaatccccacagtatttaaatttatgaataacctac...

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 4
ACTTGAATATGTTCCTGAAACTGTGAATCGCATCGCCAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaa----tttcttgcttctcagttggatctcgaaattcatattcatataataatagcaagaggcaatccccacagtatttaaatttatgaataacctac
|||||||| |||||| || ||||| ||||| || || |||| ||| |||||||| |||||||||||||| ||||||||||| || || |||||||| ||||| |||||    |||    ||   |       | ||   | || | || || | | |||    | |    |      || | |    ||| |   | ||     
ACTTGAATTTGTTCCGGAGACTGTTAATCGTATTGCAAGGAACTACAGCAGGATCAACCAGCGAATGCCCTTAATATATGTGAAACTCTATACCTATCAGgtttgtaaaagtttttcctctatgctaccttttttcatcagtccttttgatttgaaaattaacacaaattacagttccattgtccttattaaaagagaaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047783|gb|CA784461.1|CA784461
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
EST: gi|26048721|gb|CA785174.1|CA785174
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGGCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT