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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgcaattttaagcttccgtagtgatactgtttatgttggatctattaatgtataatctgtgtttctcattcaagcaagtgatagttttgtgac...

Basic information

species Glycine max
transcript GLYMA15G42300.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408594|gb|EV278402.1|EV278402
EST:     CAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: CAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCTTTTTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|213588618|gb|DB957654.1|DB957654
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
EST: gi|151410306|gb|EV280121.1|EV280121
EST:     GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAG                         GAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA
genomic: GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgc ... ctggttgcagGAACGTGTTAAGAAGCTGAAGAAAGATCATGGAAGTGTTGAATTGGGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCTTTATTCTGAGTTGAAGGAACTAGTTCCAGAGTATCAGgtttggctgcaattttaagcttccgtagtgatactgtttatgttggatctattaatgtataatctgtgtttctcattcaagcaagtgatagttttgtgac

- - - - - - -  TTGAAG
- - - - - - - - - AAGGAA